| MirGeneDB ID | Spt-Mir-1662 |
|---|---|
| Family name | MIR-1662 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1662 Ami-Mir-1662 Cli-Mir-1662 Cpi-Mir-1662 Gga-Mir-1662 Gja-Mir-1662-P3 Gja-Mir-1662-P4 Mun-Mir-1662 Tgu-Mir-1662 Xla-Mir-1662-P1 Xla-Mir-1662-P2 Xtr-Mir-1662 |
| Node of Origin (locus) | Tetrapoda |
| Node of Origin (family) | Tetrapoda |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01003143.1: 2536523-2536580 [-] UCSC Ensembl |
| Seed | UGACAUC |
| Precursor (pre-Mir +30nt flank) |
CGGCGUUGUGCAUAGCUGUGCUCUAUGGGUUUGACAUCAUCAUACUUGGGAUGUAUGACACAAAGUCCCAAGCAGACUGAUGUCAGGCCCAAGAUGGCUGCCAUCCUGUCUCGGUUUCGet precursor sequence |
| Structure | 10 20 30 40 50 CGGCGUUGUGCAUAGCU---| GC A - AUA GUAUG GU UCU UGGGUUUGACAUCA UC CUUGGGAU A CG AGA ACCCGGACUGUAGU AG GAACCCUG C CUUUGGCUCUGUCCUACCGU^ GU - C AC- AAACA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Spt-Mir-1662_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUGACAUCAUCAUACUUGGGAU -22
Get sequence
|
| Star sequence | Spt-Mir-1662_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- CCCAAGCAGACUGAUGUCAGGC -58
Get sequence
|
