MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-328

Family name MIR-328 (all species)
Seed UGGCCCU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-328a
Paralogues
Orthologues Bta-Mir-328  Cfa-Mir-328  Cpo-Mir-328  Dno-Mir-328  Ete-Mir-328  Hsa-Mir-328  Mml-Mir-328  Mmu-Mir-328  Ocu-Mir-328 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr19: 37263215-37263275 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCCUGGGCGGUCUCGGAGCCUGGGGCAGGGGGGCAGGAGGGGCUCAGGGAGAAAGCAUCUACAGCCCCUGGCCCUCUCUGCCCUUCCGUCCCCUGUCCCCAAAUACACCAGAUCCAGC
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Structure
        10          20        30        40        50        60
AAGUCCUGGGCGGUCUC--| AG CU     A         GA     U     AGAAAGC 
                   GG  C  GGGGC GGGGGGCAG  GGGGC CAGGG       A
                   CC  G  CCCUG CUUCCCGUC  UCCCG GUCCC       U
CGACCUAGACCACAUAAAC^ CU UC     C         UC     -     CGACAUC 
 .       110       100        90        80         70
Deep sequencing
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CommentAlthough there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the 3' offset reads in cow in addition to the 3p reads in armadillo where the T is not templated.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-328_5p*

mirBase accessionMIMAT0017029
Sequence
0- GGGGGGCAGGAGGGGCUCAGGG -22
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Proposed targets TargetScanVert: rno-miR-328a-5p
miRDB: MIMAT0017029
Mature sequence

Rno-Mir-328_3p

mirBase accessionMIMAT0000564
Sequence
40- CUGGCCCUCUCUGCCCUUCCG -61
Get sequence
Proposed targets microrna.org: MIMAT0000564
TargetScanVert: rno-miR-328a-3p
miRDB: MIMAT0000564