MirGeneDB ID | Bta-Mir-328 |
Family name |
MIR-328 (all species) |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-328
|
Paralogues |
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Orthologues |
Cfa-Mir-328
Cja-Mir-328
Cpo-Mir-328
Dno-Mir-328
Eca-Mir-328
Ete-Mir-328
Hsa-Mir-328
Laf-Mir-328
Mml-Mir-328
Mmr-Mir-328
Mmu-Mir-328
Ocu-Mir-328
Pab-Mir-328
Rno-Mir-328
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037345.1: 34837728-34837788 [-]
UCSC
Ensembl
|
Seed |
UGGCCCU |
Precursor (pre-Mir +30nt flank) |
AAAUCCUGGGCUGUUUCGGAGCCUGGAGCGGGGGGGCAGGAGGGGCUCAGGGAGAUAGUGUGUGCUGCCCCUGGCCCUCUCUGCCCUUCCGUCCCCUGUUCCUGAACACGCUGUGCCCAGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAUCCUGGGCUGUUUC--| CU AG GA U AGAUAGU
GGAGC GG CGGGGGGGCAG GGGGC CAGGG G
CCUUG CC GCCUUCCCGUC UCCCG GUCCC U
CGACCCGUGUCGCACAAGU^ UC CU UC - CGUCGUG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the 3' offset reads in cow in addition to the 3p reads in armadillo where the T is not templated. |
3' NTU |
Yes
|
Motifs | No |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Star sequence |
Bta-Mir-328_5p* |
mirBase accession | None |
Sequence |
0- GGGGGGCAGGAGGGGCUCAGGG -22
Get sequence
|
Mature sequence |
Bta-Mir-328_3p |
mirBase accession | MIMAT0009287 |
Sequence |
40- CUGGCCCUCUCUGCCCUUCCG -61
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-328
|