MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-15-P1o1

Family name MIR-15 (all species)
Seed AGCAGCA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-15a
Paralogues Pma-Mir-15-P1o2  Pma-Mir-15-P1o3  Pma-Mir-15-P2o1  Pma-Mir-15-P2o4 
Orthologues Cin-Mir-15-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Olfactores
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046123.1: 1714265-1714327 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAUGGAAAUGACUGGCCUCGUGGAGCUGUAGCAGCACGUAAUGGUUUGUAUUUGGGAUGUCAGGAGUUACAGACCAUGCUGUGCUGCCGCAGUGGCACGAGGAGAAGCGCACUCUCACUGC
Get precursor sequence
Structure
        10          20        30        40        50        60 
AAGAUGGAAAUGACUGG--|      GA    UA        UA          UUUGGGAU 
                   CCUCGUG  GCUG  GCAGCACG  AUGGUUUGUA        \
                   GGAGCAC  UGAC  CGUCGUGU  UACCAGACAU        G
CGUCACUCUCACGCGAAGA^      GG    GC        CG          UGAGGACU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a 1 nt snp between this precursor sequence (which is in the trace archive and supported by the read data) and the assembled sequence.
3' NTU No
MotifsNo
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-15-P1o1_5p

mirBase accessionMIMAT0019379
Sequence
0- UAGCAGCACGUAAUGGUUUGUA -22
Get sequence
Star sequence

Pma-Mir-15-P1o1_3p*

mirBase accessionNone
Sequence
41- CAGACCAUGCUGUGCUGCCGCA -63
Get sequence