MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-15-P1o3

Family name MIR-15 (all species)
Seed AGCAGCA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-497
Paralogues Pma-Mir-15-P1o1  Pma-Mir-15-P1o2  Pma-Mir-15-P2o1  Pma-Mir-15-P2o4 
Orthologues Cin-Mir-15-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Olfactores
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046115.1: 2947659-2947716 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGCGGGCAGGCGAAACCGGCCACUGGUGCAGCAGCACAACACGAUCUGUUUAGCUUUGGCUCGGCCAGAGCGUGGUGUGCUGCAGCACAAGGGUAGGGUGCUCACGACUGCCGCUG
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Structure
        10          20        30        40        50         
GCAGCGGGCAGGCGAAA--| G   A  G    A        A    A    UUUAGCUU 
                   CC GCC CU GUGC GCAGCACA CACG UCUG        \
                   GG UGG GA CACG CGUCGUGU GUGC AGAC        U
GUCGCCGUCAGCACUCGUG^ A   -  A    A        G    G    CGGCUCGG 
      110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-15-P1o3_5p

mirBase accessionMIMAT0019556
Sequence
0- CAGCAGCACAACACGAUCUGUU -22
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Star sequence

Pma-Mir-15-P1o3_3p*

mirBase accessionMIMAT0019557
Sequence
36- CCAGAGCGUGGUGUGCUGCAGC -58
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