MirGeneDB 2.1
MirGeneDB ID

Pma-Let-7-P1o1

Family name LET-7 (all species)
Seed GAGGUAG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-let-7a-4
Paralogues Pma-Let-7-P2o13  Pma-Let-7-P2o14  Pma-Let-7-P2o15  Pma-Let-7-P2o16  Pma-Let-7-P2o17  Pma-Let-7-P2o18  Pma-Let-7-P2o19  Pma-Let-7-P2o20 
Orthologues Aae-Let-7  Bge-Let-7  Bpl-Let-7  Cgi-Let-7  Cin-Let-7-P1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Npo-Let-7  Obi-Let-7  Ovu-Let-7  Pfl-Let-7  Pmi-Let-7  Sko-Let-7  Spu-Let-7  Tca-Let-7  Xbo-Let-7 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046100.1: 8235683-8235748 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1o1)		 Mir-10-P2o1 NC_046100.1: 8228227-8228284 [+] UCSC Ensembl
Let-7-P1o1 NC_046100.1: 8235683-8235748 [+] UCSC Ensembl
Mir-10-P3o1 NC_046100.1: 8251849-8251907 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUACACUUGAGCCUCCGCGCGUCUUCGGGGUGAGGUAGUAGGUUGUAUAGUUUAGCAUUACACCUACGGAGAUAACUGUACAACCUUCUAGCUUUCCCCGCGGGCGCGCAACGCAGCCACCGCCGA
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Structure
        10         20        30        40        50        60   
CUACACUUGAGCCUCCG-|      U     U   G   U             UAGCAUUACA 
                  CGCGUCU CGGGG GAG UAG AGGUUGUAUAGUU          \
                  GCGCGGG GCCCC UUC AUC UCCAACAUGUCAA          C
AGCCGCCACCGACGCAAC^      C     U   G   U             UAGAGGCAUC 
    120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Let-7-P1o1_5p
mirBase accessionMIMAT0019564
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Pma-Let-7-P1o1_3p* (predicted)
mirBase accessionNone
Sequence 
45- CUGUACAACCUUCUAGCUUUC -66
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