MirGeneDB ID | Ocu-Mir-592 |
Family name |
MIR-592 (all species) |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-592
Cfa-Mir-592
Cja-Mir-592
Cpo-Mir-592
Dno-Mir-592
Eca-Mir-592
Ete-Mir-592
Hsa-Mir-592
Laf-Mir-592
Mml-Mir-592
Mmr-Mir-592
Mmu-Mir-592
Pab-Mir-592
Rno-Mir-592
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chr7: 17299772-17299832 [+]
UCSC
Ensembl
|
Seed |
UGUGUCA |
Precursor (pre-Mir +30nt flank) |
AGUUUAGGUUGAUGAUAUUAUGCCAUGACAUUGUGUCAAUAUGCGAUGAUGUGUUGUGAUGGCACAGCGUCAUCACGUGGUGACGCAACAUCAUGACGUAAAACGUCACGACUCCGGUCAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUUUAGGUUGAUGAUA---| C CA A C GUUGUG
UUAUG CAUGA UUGUGUCA UAUG GAUGAUGU A
AAUGC GUACU AACGCAGU GUGC CUACUGCG U
AACUGGCCUCAGCACUGCAA^ A AC G A ACACGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Mir-592 was classified in Fromm et al. (2015) as a non-canonical miRNA as the Dicer cut is always +3 but given the conservation of the sequence and that it is clearly processed by Drosha it is accepted here as a bona fide miRNA. |
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-592_5p |
mirBase accession | None |
Sequence |
0- UUGUGUCAAUAUGCGAUGAUGU -22
Get sequence
|
Star sequence |
Ocu-Mir-592_3p* (predicted) |
mirBase accession | None |
Sequence |
39- UCAUCACGUGGUGACGCAACAU -61
Get sequence
|