MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-590

Family name MIR-590 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-590
Paralogues
Orthologues Bta-Mir-590  Cfa-Mir-590  Dno-Mir-590  Eca-Mir-590  Hsa-Mir-590  Mml-Mir-590  Mmr-Mir-590  Oan-Mir-590  Pab-Mir-590 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(oryCun2_add)
chrUn0067: 577872-577932 [-] UCSC Ensembl
Seed CGUUUUA
Precursor
(pre-Mir +30nt flank)
AAGUGUAGCAGUCCUAAGCCAGUCGGAAAUGAGCUUAUUCAUAAAAGUGCAGUACGAGCCGGUGAGCCUGUCGUUUUAUGUAUAAGCUCGUCUCUGAUGGAAACCUGCCGCGACGUCUCCG
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Structure
        10           20        30        40        50          
AAGUGUAGCAGUCCUAAG---|  G     A          U       GU    UACGAGC 
                     CCA UCGGA AUGAGCUUAU CAUAAAA  GCAG       \
                     GGU AGUCU UGCUCGAAUA GUAUUUU  UGUC       C
GCCUCUGCAGCGCCGUCCAAA^  -     C          U       GC    CGAGUGG 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Star sequence

Ocu-Mir-590_5p* (predicted)

mirBase accessionMIMAT0048535
Sequence
0- GAGCUUAUUCAUAAAAGUGCAG -22
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Mature sequence

Ocu-Mir-590_3p

mirBase accessionMIMAT0048536
Sequence
40- UCGUUUUAUGUAUAAGCUCGU -61
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