| MirGeneDB ID | Eca-Mir-590 |
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| Family name |
MIR-590 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-590
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| Paralogues |
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| Orthologues |
Bta-Mir-590
Cfa-Mir-590
Dno-Mir-590
Hsa-Mir-590
Mml-Mir-590
Mmr-Mir-590
Oan-Mir-590
Ocu-Mir-590
Pab-Mir-590
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| Node of Origin (locus) |
Mammalia
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| Node of Origin (family) |
Mammalia
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009160.1: 12015292-12015352 [+]
UCSC
Ensembl
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| Seed |
AAUUUUA |
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Precursor
(pre-Mir +30nt flank) |
UUCCUAAAACUCCUAUAGCCAAUCAGAAACGAGCUUAUUCAUAAAAGUACAGUAUAAUCCAGUAAACCUGUAAUUUUAUGUAUAAGCUAGUCUCUGAUUGAAACAUGCAACAAAUGUCUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCCUAAAACUCCUAUAGC--| A G U G GUAUAAUC
CAAUCAGA AC AGCUUAU CAUAAAA UACA \
GUUAGUCU UG UCGAAUA GUAUUUU AUGU C
UUUCUGUAAACAACGUACAAA^ C A U A CCAAAUGA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-590_5p* |
| mirBase accession | MIMAT0013058 |
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| Sequence |
0- GAGCUUAUUCAUAAAAGUACA -21
Get sequence
|
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| Mature sequence |
Eca-Mir-590_3p |
| mirBase accession | MIMAT0013059 |
|---|
| Sequence |
40- UAAUUUUAUGUAUAAGCUAGU -61
Get sequence
|
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