| MirGeneDB ID | Ocu-Mir-339 |
|---|
| Family name |
MIR-339 (all species) |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-339
Cfa-Mir-339
Cja-Mir-339
Cpo-Mir-339
Dno-Mir-339
Eca-Mir-339
Ete-Mir-339
Hsa-Mir-339
Laf-Mir-339
Mml-Mir-339
Mmr-Mir-339
Mmu-Mir-339
Pab-Mir-339
Rno-Mir-339
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
610623971: 240-297 [+]
UCSC
Ensembl
|
|---|
| Seed |
GAGCGCC |
|---|
Precursor
(pre-Mir +30nt flank) |
GCGGCAGGUGGAGCCAGCUGGCGGCCGCCCUCCCUGUCCUCCAGGAGCUCACGUCGGCCUGCCUGUGAGCGCCUCGACGACAGAGCCGGCGUCCGCACAGCGUCCGCGCGUCCACGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCGGCAGGUGGAGCCAG- -| C CUCC C C A UCGG
CUG GCGG CGCC CUGUC UC AGG GCUCACG C
GAC CGCC GCGG GACAG AG UCC CGAGUGU C
CGGCACCUGCGCGCCUGC A^ U CCGA C C G CCGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archive. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ocu-Mir-339_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCCCUGUCCUCCAGGAGCUCACG -23
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-339_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGAGCGCCUCGACGACAGAGCCG -58
Get sequence
|
|---|
