MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-339

Family name MIR-339 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-339  Cfa-Mir-339  Cpo-Mir-339  Dno-Mir-339  Eca-Mir-339  Ete-Mir-339  Hsa-Mir-339  Laf-Mir-339  Mml-Mir-339  Mmr-Mir-339  Mmu-Mir-339  Ocu-Mir-339  Pab-Mir-339  Rno-Mir-339 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 56078200-56078257 [+] UCSC Ensembl
Seed GAGCGCC
Precursor
(pre-Mir +30nt flank)		 
CUGUACUCUGCUGGGGCGGGGCGGCCGCUCUCCCUGUCCUCCAGGAGCUCACGUGUGCCUGCCUGUGAGCGCCUCGACGACAGAGCCGGCGCCCGCCCCAGUGUCCGCGCCUGGACGG
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Structure
        10          20        30        40        50        
CUGUACUCUGCUGGGGC--|      C    CUCC     C  C   A       UGUG 
                   GGGGCGG CGCU    CUGUC UC AGG GCUCACG    C
                   CCCCGCC GCGG    GACAG AG UCC CGAGUGU    C
GGCAGGUCCGCGCCUGUGA^      C    CCGA     C  C   G       CCGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Cja-Mir-339_5p*
mirBase accessionNone
Sequence 
0- UCCCUGUCCUCCAGGAGCUCACG -23
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Mature sequence

Cja-Mir-339_3p
mirBase accessionNone
Sequence 
35- UGAGCGCCUCGACGACAGAGCCG -58
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