| MirGeneDB ID | Cpo-Mir-339 |
|---|
| Family name |
MIR-339 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-339
|
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| Paralogues |
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| Orthologues |
Bta-Mir-339
Cfa-Mir-339
Cja-Mir-339
Dno-Mir-339
Eca-Mir-339
Ete-Mir-339
Hsa-Mir-339
Laf-Mir-339
Mml-Mir-339
Mmr-Mir-339
Mmu-Mir-339
Ocu-Mir-339
Pab-Mir-339
Rno-Mir-339
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_30: 12803260-12803317 [+]
UCSC
|
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| Seed |
CCCUGUC |
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Precursor
(pre-Mir +30nt flank) |
CCCCAUGGUGACCUGGAUGGGUGGCCGCCCUCCCUGUCCUCCAGGAGCUCACGUAUGCCUGCUUGUGAGCGCCUCGAUGACAGAGCCGGCGUCCGCCUCUGUGUCUGCAGCCUCUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCCAUGGUGACCUGGAU--| C CUCC C C A UAUG
GGGUGG CGCC CUGUC UC AGG GCUCACG C
UCCGCC GCGG GACAG AG UCC CGAGUGU C
UACUCUCCGACGUCUGUGUC^ U CCGA U C G UCGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-339_5p |
| mirBase accession | MIMAT0047176 |
|---|
| Sequence |
0- UCCCUGUCCUCCAGGAGCUCACG -23
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-339_3p* |
| mirBase accession | MIMAT0047177 |
|---|
| Sequence |
35- UGAGCGCCUCGAUGACAGAGCCG -58
Get sequence
|
|---|
