MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-339

Family name MIR-339 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-339  Cfa-Mir-339  Cja-Mir-339  Cpo-Mir-339  Dno-Mir-339  Ete-Mir-339  Hsa-Mir-339  Laf-Mir-339  Mml-Mir-339  Mmr-Mir-339  Mmu-Mir-339  Ocu-Mir-339  Pab-Mir-339  Rno-Mir-339 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009160.1: 724107-724164 [-] UCSC Ensembl
Seed CCCUGUC
Precursor
(pre-Mir +30nt flank)		 
GGACAGCCCCCGGGACCGUGGCAGCCGCUUUCCCUGUCCUCCAGGAGCUCACUUACAUCCGGCCGUGAGCUCCCCGAGGCCAGAGCCCGUGUCUGCCUCAUUGUCAGCGCCAGCACCA
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Structure
        10          20        30        40        50        
GGACAGCCCCCGGGACCGU--|    C   UUUCC   U    CA         UUACA 
                     GGCAG CGC     CUG CCUC  GGAGCUCAC     U
                     CCGUC GUG     GAC GGAG  CCUCGAGUG     C
ACCACGACCGCGACUGUUACU^    U   CCCGA   C    CC         CCGGC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-339_5p
mirBase accessionNone
Sequence 
0- UCCCUGUCCUCCAGGAGCUCACU -23
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Star sequence

Eca-Mir-339_3p*
mirBase accessionNone
Sequence 
35- UGAGCUCCCCGAGGCCAGAGCCC -58
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