MirGeneDB ID | Ocu-Mir-186 |
Family name |
MIR-186 (all species) |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-186
|
Paralogues |
|
Orthologues |
Bta-Mir-186
Cfa-Mir-186
Cja-Mir-186
Cpo-Mir-186
Dno-Mir-186
Eca-Mir-186
Ete-Mir-186
Hsa-Mir-186
Laf-Mir-186
Mdo-Mir-186
Mml-Mir-186
Mmr-Mir-186
Mmu-Mir-186
Neu-Mir-186
Oan-Mir-186
Pab-Mir-186
Rno-Mir-186
Sha-Mir-186
|
Node of Origin (locus) |
Mammalia
|
Node of Origin (family) |
Mammalia
|
Genome context (oryCun2_add) |
chr13: 94980787-94980847 [+]
UCSC
Ensembl
|
Seed |
AAAGAAU |
Precursor (pre-Mir +30nt flank) |
UCUUCCCAAUUUUUAUUGCUUAUAACUUUCCAAAGAAUUCUCCUUUUGGGCUUGCUGGUUUUAUUUUAAGCCCAAAGGUGAAUUUUUUGGGAAGUUUGGGCUAAAUUCCUUCAACCAAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUUCCCAAUUUUUAUU---| U U U GCUGGU
GCUUA AACUUUCCAAAGAAUUC CCUUU GGGCUU U
CGGGU UUGAAGGGUUUUUUAAG GGAAA CCCGAA U
UAAAACCAACUUCCUUAAAU^ - U - UUUUAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-186_5p |
mirBase accession | MIMAT0048293 |
Sequence |
0- CAAAGAAUUCUCCUUUUGGGCUU -23
Get sequence
|
Star sequence |
Ocu-Mir-186_3p* |
mirBase accession | MIMAT0048294 |
Sequence |
39- GCCCAAAGGUGAAUUUUUUGGG -61
Get sequence
|