Mir-7398-o7a

MirGeneDB ID

Neu-Mir-7398-o7a

Family name

Species

MiRBase ID

Paralogues

Neu-Mir-7398-o7b Neu-Mir-7398-o7c Neu-Mir-7398-o13 Neu-Mir-7398-o14 Neu-Mir-7398-P5 Neu-Mir-7398-P9f Neu-Mir-7398-P9g Neu-Mir-7398-P21a Neu-Mir-7398-P21b Neu-Mir-7398-P23 Neu-Mir-7398-P24 Neu-Mir-7398-P26

Orthologues

Sha-Mir-7398-o7

Node of Origin (locus)

N. eugenii

Node of Origin (family)

Marsupialia

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051820.1: 76338802-76338860 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7398-o7a)

Mir-7398-P5 CM051820.1: 76331935-76331995 [+] UCSC Ensembl
Mir-7398-P9g CM051820.1: 76333901-76333959 [+] UCSC Ensembl
Mir-7398-P9f CM051820.1: 76334563-76334621 [+] UCSC Ensembl
Mir-7398-o7a CM051820.1: 76338802-76338860 [+] UCSC Ensembl
Mir-7398-o7b CM051820.1: 76339936-76339994 [+] UCSC Ensembl
Mir-7398-o7c CM051820.1: 76340242-76340300 [+] UCSC Ensembl
Mir-7398-P21a CM051820.1: 76345814-76345868 [+] UCSC Ensembl
Mir-7398-P23 CM051820.1: 76354266-76354324 [+] UCSC Ensembl
Mir-7398-P24 CM051820.1: 76358199-76358257 [+] UCSC Ensembl
Mir-7398-o13 CM051820.1: 76359288-76359344 [+] UCSC Ensembl
Mir-7398-o14 CM051820.1: 76361111-76361170 [+] UCSC Ensembl
Mir-7398-P26 CM051820.1: 76361577-76361636 [+] UCSC Ensembl
Mir-7398-P21b CM051820.1: 76365212-76365266 [+] UCSC Ensembl

Seed

GUGUAGA

Precursor
(pre-Mir +30nt flank)

CUCCUAGGCUUUGACCUCCAGGUGCCCGACUGUGUAGAGGCGAGAAAAUUACUGUGUUGUGACUUGGUAAAUUUCUUGCCUUUCACAAUUGAGUAUCUGGGACUCUGCUACUGUCCCCU

Get precursor sequence

Structure

        10          20        30        40        50         
CUCCUAGGCUUUGACCU--|       C   C    U            A     GUGUU 
                   CCAGGUGC CGA UGUG AGAGGCGAGAAA UUACU     G
                   GGUCUAUG GUU ACAC UUUCCGUUCUUU AAUGG     U
UCCCCUGUCAUCGUCUCAG^       A   A    -            A     UUCAG 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-7398-o7a_5p

mirBase accession

None

Sequence

0- UGUGUAGAGGCGAGAAAAUUACU -23

Get sequence

Star sequence

Neu-Mir-7398-o7a_3p*

mirBase accession

None

Sequence

37- UAAAUUUCUUGCCUUUCACAAU -59

Get sequence