Mir-7398-P9f

MirGeneDB ID

Neu-Mir-7398-P9f

Family name

Species

MiRBase ID

Paralogues

Neu-Mir-7398-o7a Neu-Mir-7398-o7b Neu-Mir-7398-o7c Neu-Mir-7398-o13 Neu-Mir-7398-o14 Neu-Mir-7398-P5 Neu-Mir-7398-P9g Neu-Mir-7398-P21a Neu-Mir-7398-P21b Neu-Mir-7398-P23 Neu-Mir-7398-P24 Neu-Mir-7398-P26

Orthologues

Sha-Mir-7398-o9

Node of Origin (locus)

N. eugenii

Node of Origin (family)

Marsupialia

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051820.1: 76334563-76334621 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7398-P9f)

Mir-7398-P5 CM051820.1: 76331935-76331995 [+] UCSC Ensembl
Mir-7398-P9g CM051820.1: 76333901-76333959 [+] UCSC Ensembl
Mir-7398-P9f CM051820.1: 76334563-76334621 [+] UCSC Ensembl
Mir-7398-o7a CM051820.1: 76338802-76338860 [+] UCSC Ensembl
Mir-7398-o7b CM051820.1: 76339936-76339994 [+] UCSC Ensembl
Mir-7398-o7c CM051820.1: 76340242-76340300 [+] UCSC Ensembl
Mir-7398-P21a CM051820.1: 76345814-76345868 [+] UCSC Ensembl
Mir-7398-P23 CM051820.1: 76354266-76354324 [+] UCSC Ensembl
Mir-7398-P24 CM051820.1: 76358199-76358257 [+] UCSC Ensembl
Mir-7398-o13 CM051820.1: 76359288-76359344 [+] UCSC Ensembl
Mir-7398-o14 CM051820.1: 76361111-76361170 [+] UCSC Ensembl
Mir-7398-P26 CM051820.1: 76361577-76361636 [+] UCSC Ensembl
Mir-7398-P21b CM051820.1: 76365212-76365266 [+] UCSC Ensembl

Seed

GUGUAGA

Precursor
(pre-Mir +30nt flank)

CUCCUGUUCUUUGACCUUCAGGUGUCCGAUUGUGUAGAGGUAAGAACUAUGCUGUGUUCUCAAUAGGUAUAUUUCGUGCCUCUACCAAUUGAGCAUCUUGGACUUGGCUGCUGUCCCCU

Get precursor sequence

Structure

        10          20        30        40        50         
CUCCUGUUCUUUGACCU-  -|    UC      U         A   C      GUGUU 
                  UC AGGUG  CGAUUG GUAGAGGUA GAA UAUGCU     C
                  GG UCUAC  GUUAAC CAUCUCCGU CUU AUAUGG     U
UCCCCUGUCGUCGGUUCA  U^    GA      -         G   U      AUAAC 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-7398-P9f_5p (predicted)

mirBase accession

None

Sequence

0- UGUGUAGAGGUAAGAACUAUGCU -23

Get sequence

Star sequence

Neu-Mir-7398-P9f_3p* (predicted)

mirBase accession

None

Sequence

37- UAUAUUUCGUGCCUCUACCAAU -59

Get sequence