MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-154-P4-o1

Family name MIR-154 (all species)
Seed GAGGUUU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-329
Paralogues Mmu-Mir-154-P1  Mmu-Mir-154-P2-v1  Mmu-Mir-154-P2-v2  Mmu-Mir-154-P3a-v1  Mmu-Mir-154-P3a-v2  Mmu-Mir-154-P5  Mmu-Mir-154-P6  Mmu-Mir-154-P7  Mmu-Mir-154-P8  Mmu-Mir-154-P9  Mmu-Mir-154-P10  Mmu-Mir-154-P12  Mmu-Mir-154-P13  Mmu-Mir-154-P14  Mmu-Mir-154-P15  Mmu-Mir-154-P17  Mmu-Mir-154-P18  Mmu-Mir-154-P19  Mmu-Mir-154-P20-v1  Mmu-Mir-154-P20-v2  Mmu-Mir-154-P21  Mmu-Mir-154-P22  Mmu-Mir-154-P26  Mmu-Mir-154-P29-v1  Mmu-Mir-154-P29-v2  Mmu-Mir-154-P30  Mmu-Mir-154-P34  Mmu-Mir-154-P36 
Orthologues Bta-Mir-154-P4a  Bta-Mir-154-P4b  Cfa-Mir-154-P4a  Cfa-Mir-154-P4b  Cpo-Mir-154-P4-o1  Dno-Mir-154-P4a  Dno-Mir-154-P4b  Ete-Mir-154-P4a  Ete-Mir-154-P4b  Hsa-Mir-154-P4a  Hsa-Mir-154-P4b  Mml-Mir-154-P4a  Mml-Mir-154-P4b  Ocu-Mir-154-P4-o1  Rno-Mir-154-P4-o1 
Node of Origin (locus) Glires
Node of Origin (family) Eutheria
Genome context
(mm10)
chr12: 109713503-109713562 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P4-o1)
Mir-154-P7 chr12: 109709065-109709122 [+] UCSC Ensembl
Mir-154-P13 chr12: 109710190-109710245 [+] UCSC Ensembl
Mir-154-P2-v1 chr12: 109710643-109710697 [+] UCSC Ensembl
Mir-154-P2-v2 chr12: 109710644-109710696 [+] UCSC Ensembl
Mir-154-P8 chr12: 109711806-109711862 [+] UCSC Ensembl
Mir-154-P30 chr12: 109712361-109712416 [+] UCSC Ensembl
Mir-154-P3a-v1 chr12: 109712523-109712578 [+] UCSC Ensembl
Mir-154-P3a-v2 chr12: 109712523-109712578 [+] UCSC Ensembl
Mir-154-P26 chr12: 109712823-109712880 [+] UCSC Ensembl
Mir-154-P4-o1 chr12: 109713503-109713562 [+] UCSC Ensembl
Mir-154-P18 chr12: 109715334-109715389 [+] UCSC Ensembl
Mir-154-P29-v1 chr12: 109715715-109715771 [+] UCSC Ensembl
Mir-154-P29-v2 chr12: 109715716-109715770 [+] UCSC Ensembl
Mir-666 chr12: 109717103-109717163 [+] UCSC Ensembl
Mir-154-P22 chr12: 109717268-109717326 [+] UCSC Ensembl
Mir-154-P19 chr12: 109718757-109718816 [+] UCSC Ensembl
Mir-667 chr12: 109720020-109720083 [+] UCSC Ensembl
Mir-376-P4 chr12: 109722733-109722790 [+] UCSC Ensembl
Mir-376-P2 chr12: 109723471-109723528 [+] UCSC Ensembl
Mir-376-P1 chr12: 109723787-109723844 [+] UCSC Ensembl
Mir-154-P34 chr12: 109724322-109724384 [+] UCSC Ensembl
Mir-154-P9 chr12: 109726829-109726891 [+] UCSC Ensembl
Mir-154-P17 chr12: 109727346-109727403 [+] UCSC Ensembl
Mir-154-P21 chr12: 109728136-109728197 [+] UCSC Ensembl
Mir-544 chr12: 109729335-109729391 [+] UCSC Ensembl
Mir-154-P10 chr12: 109733781-109733838 [+] UCSC Ensembl
Mir-134 chr12: 109734145-109734205 [+] UCSC Ensembl
Mir-154-P15 chr12: 109734910-109734968 [+] UCSC Ensembl
Mir-154-P1 chr12: 109738438-109738495 [+] UCSC Ensembl
Mir-154-P20-v2 chr12: 109739132-109739187 [+] UCSC Ensembl
Mir-154-P20-v1 chr12: 109739132-109739187 [+] UCSC Ensembl
Mir-154-P6 chr12: 109740515-109740574 [+] UCSC Ensembl
Mir-541 chr12: 109742422-109742487 [+] UCSC Ensembl
Mir-154-P36 chr12: 109743172-109743225 [+] UCSC Ensembl
Mir-154-P14 chr12: 109743303-109743358 [+] UCSC Ensembl
Mir-154-P5 chr12: 109743431-109743486 [+] UCSC Ensembl
Mir-154-P12 chr12: 109743729-109743784 [+] UCSC Ensembl
Mir-3072 chr12: 109747893-109747949 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUCAGUGUUCGCUUCUGGUACCGGAAGAGAGGUUUUCUGGGUCUCUGUUUCUUUGAUGAGAAUGAAACACACCCAGCUAACCUUUUUUUCAGUAUCAAAUCCCAUCUUGGAGGCUUC
Get precursor sequence
Structure
        10          20        30        40        50        60
CUUGUCAGUGUUCGCUUC--|     C            UU      CUC     CUUUGA 
                    UGGUAC GGAAGAGAGGUU  CUGGGU   UGUUU      U
                    ACUAUG CUUUUUUUCCAA  GACCCA   ACAAA      G
CUUCGGAGGUUCUACCCUAA^     A            UC      C--     GUAAGA 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
CommentThe murids are arm switched realtive to other mammals.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-154-P4-o1_5p

mirBase accessionMIMAT0017032
Sequence
0- AGAGGUUUUCUGGGUCUCUGUUU -23
Get sequence
Proposed targets TargetScanVert: mmu-miR-329-5p
miRDB: MIMAT0017032
Star sequence

Mmu-Mir-154-P4-o1_3p*

mirBase accessionMIMAT0000567
Sequence
38- AACACACCCAGCUAACCUUUUU -60
Get sequence
Proposed targets microrna.org: MIMAT0000567
TargetScanVert: mmu-miR-329-3p
miRDB: MIMAT0000567