Mir-154-P33

MirGeneDB ID

Mmr-Mir-154-P33

Family name

MIR-154 (all species)

Species

Gray mouse lemur (Microcebus murinus)

MiRBase ID

mmr-mir-410

Paralogues

Mmr-Mir-154-P1 Mmr-Mir-154-P2-v1 Mmr-Mir-154-P3-v1 Mmr-Mir-154-P5 Mmr-Mir-154-P6a-v1 Mmr-Mir-154-P6b Mmr-Mir-154-P6c Mmr-Mir-154-P7 Mmr-Mir-154-P8a Mmr-Mir-154-P8b Mmr-Mir-154-P9 Mmr-Mir-154-P10 Mmr-Mir-154-P11 Mmr-Mir-154-P12 Mmr-Mir-154-P14 Mmr-Mir-154-P16 Mmr-Mir-154-P17 Mmr-Mir-154-P18 Mmr-Mir-154-P20 Mmr-Mir-154-P21 Mmr-Mir-154-P22 Mmr-Mir-154-P23 Mmr-Mir-154-P24 Mmr-Mir-154-P25 Mmr-Mir-154-P26 Mmr-Mir-154-P28 Mmr-Mir-154-P29 Mmr-Mir-154-P30 Mmr-Mir-154-P31 Mmr-Mir-154-P32 Mmr-Mir-154-P34 Mmr-Mir-154-P37

Orthologues

Bta-Mir-154-P33 Cfa-Mir-154-P33 Cja-Mir-154-P33 Cpo-Mir-154-P33 Dno-Mir-154-P33 Eca-Mir-154-P33 Ete-Mir-154-P33 Hsa-Mir-154-P33 Laf-Mir-154-P33 Mml-Mir-154-P33 Mmu-Mir-154-P33 Ocu-Mir-154-P33 Pab-Mir-154-P33 Rno-Mir-154-P33

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_000165445.3_Mmur_3.0_genomic)

CM007663.1: 12759838-12759893 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P33)

Mir-154-P1 CM007663.1: 12718303-12718361 [+] UCSC Ensembl
Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P3-v1 CM007663.1: 12720026-12720080 [+] UCSC Ensembl
Mir-154-P3-v2 CM007663.1: 12720027-12720079 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P5 CM007663.1: 12721763-12721818 [+] UCSC Ensembl
Mir-154-P6a-v1 CM007663.1: 12721925-12721980 [+] UCSC Ensembl
Mir-154-P6a-v2 CM007663.1: 12721925-12721980 [+] UCSC Ensembl
Mir-154-P7 CM007663.1: 12722219-12722276 [+] UCSC Ensembl
Mir-154-P8a CM007663.1: 12722967-12723025 [+] UCSC Ensembl
Mir-154-P8b CM007663.1: 12723284-12723341 [+] UCSC Ensembl
Mir-154-P9 CM007663.1: 12725475-12725530 [+] UCSC Ensembl
Mir-154-P10 CM007663.1: 12725895-12725951 [+] UCSC Ensembl
Mir-154-P11 CM007663.1: 12727838-12727894 [+] UCSC Ensembl
Mir-154-P12 CM007663.1: 12729563-12729620 [+] UCSC Ensembl
Mir-376-P1 CM007663.1: 12733939-12733996 [+] UCSC Ensembl
Mir-376-P2 CM007663.1: 12734266-12734323 [+] UCSC Ensembl
Mir-376-P3 CM007663.1: 12734651-12734708 [+] UCSC Ensembl
Mir-154-P14 CM007663.1: 12734778-12734832 [+] UCSC Ensembl
Mir-376-P4 CM007663.1: 12735002-12735059 [+] UCSC Ensembl
Mir-376-P5 CM007663.1: 12735323-12735380 [+] UCSC Ensembl
Mir-154-P16 CM007663.1: 12737194-12737253 [+] UCSC Ensembl
Novel-1 CM007663.1: 12738931-12738989 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P18 CM007663.1: 12740364-12740421 [+] UCSC Ensembl
Mir-154-P20 CM007663.1: 12741825-12741884 [+] UCSC Ensembl
Mir-544 CM007663.1: 12742576-12742632 [+] UCSC Ensembl
Mir-154-P21 CM007663.1: 12743455-12743514 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P23 CM007663.1: 12746050-12746107 [+] UCSC Ensembl
Mir-154-P24 CM007663.1: 12748064-12748121 [+] UCSC Ensembl
Mir-134 CM007663.1: 12748440-12748499 [+] UCSC Ensembl
Mir-154-P25 CM007663.1: 12749203-12749261 [+] UCSC Ensembl
Mir-154-P6b CM007663.1: 12750026-12750082 [+] UCSC Ensembl
Mir-154-P26 CM007663.1: 12753864-12753921 [+] UCSC Ensembl
Mir-154-P28 CM007663.1: 12755051-12755104 [+] UCSC Ensembl
Mir-154-P29 CM007663.1: 12756506-12756565 [+] UCSC Ensembl
Mir-541 CM007663.1: 12758520-12758585 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P31 CM007663.1: 12759397-12759451 [+] UCSC Ensembl
Mir-154-P32 CM007663.1: 12759536-12759591 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl
Mir-154-P6c CM007663.1: 12760342-12760397 [+] UCSC Ensembl
Mir-154-P34 CM007663.1: 12760563-12760618 [+] UCSC Ensembl

Seed

AUAUAAC

Precursor
(pre-Mir +30nt flank)

UUGACGACGUCACCUUGGGUACUUGAGGAGAGGUUGUCUGUGAUGAGUUCGCUUUAUUAAUGACGAAUAUAACACAGAUGGCCUGUUUUCGGUACCACCUGGCGCUCAGCGGAACG

Get precursor sequence

Structure

        10           20        30        40        50       
UUGACGACGUCACCUUG---|     U     G    UG      A  A     CUUUA 
                    GGUACU GAGGA AGGU  UCUGUG UG GUUCG     U
                    CCAUGG CUUUU UCCG  AGACAC AU UAAGC     U
GCAAGGCGACUCGCGGUCCA^     -     G    GU      A  A     AGUAA 
    110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu

Star sequence

Mmr-Mir-154-P33_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUUGUCUGUGAUGAGUUCG -21

Get sequence

Mature sequence

Mmr-Mir-154-P33_3p

mirBase accession

MIMAT0049189

Sequence

35- AAUAUAACACAGAUGGCCUGU -56

Get sequence