MirGeneDB ID | Mml-Mir-628 |
Family name |
MIR-628 (all species) |
Species |
Rhesus monkey (Macaca mulatta) |
MiRBase ID |
mml-mir-628
|
Paralogues |
|
Orthologues |
Bta-Mir-628
Cfa-Mir-628
Cja-Mir-628
Dno-Mir-628
Eca-Mir-628
Ete-Mir-628
Hsa-Mir-628
Laf-Mir-628
Mmr-Mir-628
Ocu-Mir-628
Pab-Mir-628
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_003339765.3_Mmul_10_traces) |
CM014342.1: 31795692-31795752 [-]
UCSC
Ensembl
|
Seed |
UGCUGAC |
Precursor (pre-Mir +30nt flank) |
UAUCGGAGAUAGCUGUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGACUCAUCUGACUUCUGGAAACCUA
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUCGGAGAUAGCUGUU---|U A CA - A A GUAAAA
G GUC CUUCCU UG CUG CAU UUUACUAGAGG U
C CAG GAAGGG GC GAC GUG GAAUGAUCUUC U
AUCCAAAGGUCUUCAGUCUA^U - AA U G A CAAUAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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Mature sequence |
Mml-Mir-628_5p |
mirBase accession | MIMAT0006474 |
Sequence |
0- AUGCUGACAUAUUUACUAGAGG -22
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-628-5p
|
Star sequence |
Mml-Mir-628_3p* |
mirBase accession | MIMAT0006475 |
Sequence |
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-628-3p
|