| MirGeneDB ID | Laf-Mir-628 |
|---|
| Family name |
MIR-628 (all species) |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-628
Cfa-Mir-628
Cja-Mir-628
Dno-Mir-628
Eca-Mir-628
Ete-Mir-628
Hsa-Mir-628
Mml-Mir-628
Mmr-Mir-628
Ocu-Mir-628
Pab-Mir-628
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010086.1: 1491551-1491611 [-]
UCSC
Ensembl
|
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| Seed |
UGCUGAC |
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Precursor
(pre-Mir +30nt flank) |
CUGUUGGGAAAGCUGUUGUGUCACUUCCUCAUGCUGACAUGUUUACUAGAGGGUAAAACUGAUAACCGUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAACCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGUUGGGAAAGCUGUU--- U A CA - A G -| GUAAAA
G GUC CUUCCU UG CUG CAU UUUACUAGA GG \
C CGG GAAGGG GC GAC GUG GAAUGAUCU CC C
GUCCAAAGGUCUUCAGUCUA U - AA U G A G^ AAUAGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Laf-Mir-628_5p |
| mirBase accession | None |
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| Sequence |
0- AUGCUGACAUGUUUACUAGAGG -22
Get sequence
|
|---|
| Co-mature sequence |
Laf-Mir-628_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence
|
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