| MirGeneDB ID | Eca-Mir-628 |
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| Family name |
MIR-628 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-628a
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| Paralogues |
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| Orthologues |
Bta-Mir-628
Cfa-Mir-628
Cja-Mir-628
Dno-Mir-628
Ete-Mir-628
Hsa-Mir-628
Laf-Mir-628
Mml-Mir-628
Mmr-Mir-628
Ocu-Mir-628
Pab-Mir-628
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009148.1: 136675943-136676003 [+]
UCSC
Ensembl
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| Seed |
UGCUGAC |
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Precursor
(pre-Mir +30nt flank) |
UAUCGGAGAUAGCUGUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCCGGAAACCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAUCGGAGAUAGCUGUU---|U A CA - A A GUAAAA
G GUC CUUCCU UG CUG CAU UUUACUAGAGG U
C CGG GAAGGG GC GAC GUG GAAUGAUCUUC U
GUCCAAAGGCCUUCAGUCUA^U - AA U G A CAAUAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-628_5p |
| mirBase accession | MIMAT0012903 |
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| Sequence |
0- AUGCUGACAUAUUUACUAGAGG -22
Get sequence
|
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| Star sequence |
Eca-Mir-628_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence
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