MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-628

Family name MIR-628 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-628  Cfa-Mir-628  Dno-Mir-628  Eca-Mir-628  Ete-Mir-628  Hsa-Mir-628  Laf-Mir-628  Mml-Mir-628  Mmr-Mir-628  Ocu-Mir-628  Pab-Mir-628 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 38936321-38936381 [-] UCSC Ensembl
Seed UGCUGAC
Precursor
(pre-Mir +30nt flank)		 
UAUUGGAGAUAGCUAUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAGUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAUCCUG
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Structure
        10           20        30         40        50         
UAUUGGAGAUAGCUAUU---|U   A      CA  -   A   A           GUAAAG 
                    G GUC CUUCCU  UG CUG CAU UUUACUAGAGG      U
                    C CGG GAAGGG  GC GAC GUG GAAUGAUCUUC      U
GUCCUAAGGUCUUCAGUCUA^U   -      AA  U   G   A           CAAUAA 
 .       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-628_5p
mirBase accessionNone
Sequence 
0- AUGCUGACAUAUUUACUAGAGG -22
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Star sequence

Cja-Mir-628_3p*
mirBase accessionNone
Sequence 
38- UCUAGUAAGAGUGGCAGUCGAAG -61
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