| MirGeneDB ID | Bta-Mir-628 |
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| Family name |
MIR-628 (all species) |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-628
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| Paralogues |
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| Orthologues |
Cfa-Mir-628
Cja-Mir-628
Dno-Mir-628
Eca-Mir-628
Ete-Mir-628
Hsa-Mir-628
Laf-Mir-628
Mml-Mir-628
Mmr-Mir-628
Ocu-Mir-628
Pab-Mir-628
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037337.1: 54959667-54959727 [+]
UCSC
Ensembl
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| Seed |
UGCUGAC |
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Precursor
(pre-Mir +30nt flank) |
UAUCGGAGAUAGCUGUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAGCCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAUCGGAGAUAGCUGUU---|U A CA - A A GUAAAA
G GUC CUUCCU UG CUG CAU UUUACUAGAGG U
C CGG GAAGGG GC GAC GUG GAAUGAUCUUC U
GUCCGAAGGUCUUCAGUCUA^U - AA U G A CAAUAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Mature sequence |
Bta-Mir-628_5p |
| mirBase accession | MIMAT0009356 |
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| Sequence |
0- AUGCUGACAUAUUUACUAGAGG -22
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-628
|
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| Star sequence |
Bta-Mir-628_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence
|
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