| MirGeneDB ID | Lan-Mir-92-o80b |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Lingula (Lingula anatina) |
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| MiRBase ID |
|
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| Paralogues |
Lan-Mir-92-o79a
Lan-Mir-92-o79b
Lan-Mir-92-o80a
Lan-Mir-92-o81
Lan-Mir-92-o82
Lan-Mir-92-o83
Lan-Mir-92-o84
Lan-Mir-92-o85
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
L. anatina
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(LinAna_1.0) |
LFEI01000276: 122217-122275 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAGAAAUGACGGAAUAACUCUAGGGCACGUAGGCAGUGAUGAGGGCAAUAUUGUGAAAGAAAUGGCAAAUUGCACUCGUCCCGGCCUGCUGGACCCUUAACAUACGGCACUCCUUGUGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAGAAAUGACGGAAUAACUCU- CA -| AGU G A UGAAA
AGGG C GUAGGC GAUGAG GCAAU UUG G
UCCC G CGUCCG CUGCUC CGUUA AAC A
GGUGUUCCUCACGGCAUACAAU AG U^ GCC A - GGUAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lan-Mir-92-o80b_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGCAGUGAUGAGGGCAAUAUUG -23
Get sequence
|
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| Mature sequence |
Lan-Mir-92-o80b_3p |
| mirBase accession | None |
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| Sequence |
37- AAUUGCACUCGUCCCGGCCUGC -59
Get sequence
|
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