Mir-203-P1-v1

MirGeneDB ID

Gmo-Mir-203-P1-v1

Family name

MIR-203 (all species)

Seed

UGAAAUG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-203a

Paralogues

Gmo-Mir-203-P1-v2 Gmo-Mir-203-P2-v1 Gmo-Mir-203-P2-v2

Orthologues

Dre-Mir-203-P1-v1 Dre-Mir-203-P1-v2 Lch-Mir-203 Mal-Mir-203-P1-v1 Mal-Mir-203-P1-v2 Pma-Mir-203-o1 Spt-Mir-203

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2769: 7537-7595 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-203-P1-v1)

Mir-203-P1-v2 GeneScaffold_2769: 7536-7596 [-] UCSC Ensembl
Mir-203-P1-v1 GeneScaffold_2769: 7537-7595 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCCCGGAACUGAAACGCUCUCUUUGGUCUAGUGGUUCUCAAUAGUUCAACAGUCUUUCUUGAUUUUGUGAAAUGUUUAGGACCACUUGACCACUGAGCAGGAGAUCUCUGCCACACCC

Get precursor sequence

Structure

        10          20        30        40        50         
AUCCCGGAACUGAAACG-  -|  UU     U         C    G    A  GUCUUU 
                  CU CUC  UGGUC AGUGGUUCU AAUA UUCA CA      C
                  GA GAG  ACCAG UCACCAGGA UUGU AAGU GU      U
CCCACACCGUCUCUAGAG  C^  UC     U         U    A    -  UUUAGU 
       110       100        90        80        70         60