MirGeneDB 3.0
MirGeneDB ID

Egr-Mir-2160-P5

Family name MIR-2160 (all species)
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-10227e
Paralogues Egr-Mir-2160-P2a  Egr-Mir-2160-P2b  Egr-Mir-2160-P3  Egr-Mir-2160-P4  Egr-Mir-2160-P6  Egr-Mir-2160-P7 
Orthologues Gsa-Mir-2160  Pcr-Mir-2160  Sma-Mir-2160 
Node of Origin (locus) E. granulosus
Node of Origin (family) Platyhelminthes
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)		 APAU02000041.1: 46714-46770 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2160-P5)		 Mir-2160-P6 APAU02000041.1: 46144-46200 [+] UCSC Ensembl
Mir-2160-P3 APAU02000041.1: 46431-46487 [+] UCSC Ensembl
Mir-2160-P5 APAU02000041.1: 46714-46770 [+] UCSC Ensembl
Mir-2160-P4 APAU02000041.1: 52255-52311 [+] UCSC Ensembl
Mir-2160-P2b APAU02000041.1: 53714-53776 [-] UCSC Ensembl
Mir-2160-P2a APAU02000041.1: 53907-53961 [-] UCSC Ensembl
Seed GGCGCUU
Precursor
(pre-Mir +30nt flank)		 
CACAGAAACCAUGAAUUUAGUGAGCGAAGGUGGCGCUUGGUUAUUCUACUGAUAGCCAAAAGUCAGUCGUAUAAUCAACGUGCCGCACUCACUCAUGUGGAUCUCCUCAAUCCUGUG
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Structure
        10          20        30         40        50       
CACAGAAACCAUGAAUUUA--     C  AG       -|       UCU     UAGC 
                     GUGAG GA  GUGGCGC UUGGUUAU   ACUGA    C
                     UACUC CU  CGCCGUG AACUAAUA   UGACU    A
GUGUCCUAACUCCUCUAGGUG     A  CA       C^       UGC     GAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Mature sequence

Egr-Mir-2160-P5_5p (predicted)
mirBase accessionMIMAT0041245
Sequence 
0- UGGCGCUUGGUUAUUCUACUGA -22
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Star sequence

Egr-Mir-2160-P5_3p* (predicted)
mirBase accessionMIMAT0041246
Sequence 
34- AGUCGUAUAAUCAACGUGCCGCA -57
Get sequence