MirGeneDB 3.0
MirGeneDB ID

Egr-Mir-2160-P4

Family name MIR-2160 (all species)
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-10227a
Paralogues Egr-Mir-2160-P2a  Egr-Mir-2160-P2b  Egr-Mir-2160-P3  Egr-Mir-2160-P5  Egr-Mir-2160-P6  Egr-Mir-2160-P7 
Orthologues Gsa-Mir-2160  Pcr-Mir-2160  Sma-Mir-2160 
Node of Origin (locus) E. granulosus
Node of Origin (family) Platyhelminthes
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)		 APAU02000041.1: 52255-52311 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2160-P4)		 Mir-2160-P6 APAU02000041.1: 46144-46200 [+] UCSC Ensembl
Mir-2160-P3 APAU02000041.1: 46431-46487 [+] UCSC Ensembl
Mir-2160-P5 APAU02000041.1: 46714-46770 [+] UCSC Ensembl
Mir-2160-P4 APAU02000041.1: 52255-52311 [+] UCSC Ensembl
Mir-2160-P2b APAU02000041.1: 53714-53776 [-] UCSC Ensembl
Mir-2160-P2a APAU02000041.1: 53907-53961 [-] UCSC Ensembl
Seed GGCGCUU
Precursor
(pre-Mir +30nt flank)		 
UAGGUGAUUCCGUUUUUAUGUAGGAGGAUGUGGCGCUUUCUAACUUUACUGAUAGUGAUUUAUCAGUAAAGUCAUAAAUGCACCUCAUUCCCUUACGUGAGACAACCAGAUUCUACC
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Structure
        10          20        30         40        50       
UAGGUGAUUCCGUUUUU--       A     U  C  -|  CUA          UAGU 
                   AUGUAGG GGAUG GG GC UUU   ACUUUACUGA    G
                   UGCAUUC CUUAC CC CG AAA   UGAAAUGACU    A
CCAUCUUAGACCAACAGAG       C     U  A  U^  UAC          AUUU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Mature sequence

Egr-Mir-2160-P4_5p (predicted)
mirBase accessionMIMAT0041179
Sequence 
0- UGGCGCUUUCUAACUUUACUGA -22
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Star sequence

Egr-Mir-2160-P4_3p* (predicted)
mirBase accessionMIMAT0041180
Sequence 
34- AGUAAAGUCAUAAAUGCACCUCA -57
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