| MirGeneDB ID | Efe-Mir-1997-P2 |
|---|
| Family name |
MIR-1997 (all species) |
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| Seed |
CUGCAGG |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-1997-P1
Efe-Mir-1997-P3
Efe-Mir-1997-P4
Efe-Mir-1997-P5
|
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| Orthologues |
Cte-Mir-1997
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Annelida
|
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Genome context
(Efe_combined) |
Efet.01.386486: 2534-2595 [+]
|
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Precursor
(pre-Mir +30nt flank) |
UUCCCACUGCUUAUUUGAGUGCUUGGCUGUUGGACUGAUGGUCCUUGCAUAGUGUUGGCUGAAUCAACUCUGCAGGUUCACAUCAGCCCUAUAGCCGGCACCAGUCUACAGGACGAGGAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCCCACUGCUUAUUUGA---| U U A GUC- U GUUGGC
GUGCU GGCUGU GG CUGAUG CUUGCA AGU \
CACGG CCGAUA CC GACUAC GGACGU UCA U
CUGAGGAGCAGGACAUCUGAC^ - U C ACUU C ACUAAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-1997-P2_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UGGACUGAUGGUCCUUGCAUAGU -23
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-1997-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCUGCAGGUUCACAUCAGCCCUAU -62
Get sequence
|
|---|
