MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1997-P1

Family name MIR-1997 (all species)
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1997-P2  Efe-Mir-1997-P3  Efe-Mir-1997-P4  Efe-Mir-1997-P5 
Orthologues Cte-Mir-1997  Dgr-Mir-1997  Pdu-Mir-1997  Snu-Mir-1997 
Node of Origin (locus) E. fetida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Efe_combined)		 Efet.01.511825: 1660-1722 [+]
Seed CUGCAGG
Precursor
(pre-Mir +30nt flank)		 
UGCUGUUAGCUAUGAAAAAUGCAGACUGUUAGGCUGAUGGUUUCUGCACAGGGUGUAAUAAUAACGAACUCUGCAGGUUCACAUCAGCCCUAUGGAAUGUGUUUGGCAGCAAAGACAAUGCUG
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Structure
        10           20        30        40         50        60 
UGCUGUUAGCUAUGAAA---      GA    UA        GUU-|     CA    GUAAUA 
                    AAUGCA  CUGU  GGCUGAUG    UCUGCA  GGGU      \
                    UUGUGU  GGUA  CCGACUAC    GGACGU  CUCA      A
GUCGUAACAGAAACGACGGU      AA    UC        ACUU^     --    AGCAAU 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Efe-Mir-1997-P1_5p*
mirBase accessionNone
Sequence 
0- AGGCUGAUGGUUUCUGCACAGGGU -24
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Mature sequence

Efe-Mir-1997-P1_3p
mirBase accessionNone
Sequence 
39- UCUGCAGGUUCACAUCAGCCCUAU -63
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