MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-505

Family name MIR-505 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-505
Paralogues
Orthologues Bta-Mir-505-v1  Cfa-Mir-505-v1  Cja-Mir-505  Cpo-Mir-505-v1  Dno-Mir-505-v1  Ete-Mir-505-v1  Hsa-Mir-505-v1  Laf-Mir-505-v1  Mml-Mir-505-v1  Mmr-Mir-505-v1  Mmu-Mir-505-v1  Ocu-Mir-505-v1  Pab-Mir-505-v1  Rno-Mir-505-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 115406723-115406781 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-505-v1)		 Mir-505-v1 CM009179.1: 115406723-115406781 [-] UCSC Ensembl
Mir-505-v2 CM009179.1: 115406723-115406781 [-] UCSC Ensembl
Variant

Eca-Mir-505-v1
Seed GGAGCCA
Precursor
(pre-Mir +30nt flank)		 
CUGACCGUGGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC
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Structure
        10           20        30        40        50         
CUGACCGUGGUAAAUUG---|   AC    U           G    A        UCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGUU     \
                    UACG  GGUC CUCCUUUGGUC UUCA AACUGCGA     C
CUUUUAGGUGCUUGAACCAC^   A-    U           G    C        UUUGA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-505-v1_5p
mirBase accessionNone
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGUU -23
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Co-mature sequence

Eca-Mir-505-v1_3p
mirBase accessionMIMAT0013229
Sequence 
36- CGUCAACACUUGCUGGUUUCCUC -59
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Variant

Eca-Mir-505-v2
Seed GGAGCCA
Precursor
(pre-Mir +30nt flank)		 
CUGACCGUGGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC
Get precursor sequence
Structure
        10           20        30        40        50         
CUGACCGUGGUAAAUUG---|   AC    U           G    A       UUCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGU      \
                    UACG  GGUC CUCCUUUGGUC UUCA AACUGCG      C
CUUUUAGGUGCUUGAACCAC^   A-    U           G    C       AUUUGA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-505-v2_5p
mirBase accessionNone
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGU -22
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Co-mature sequence

Eca-Mir-505-v2_3p
mirBase accessionMIMAT0013229
Sequence 
37- GUCAACACUUGCUGGUUUCCUC -59
Get sequence