MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-505

Family name MIR-505 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-505
Paralogues
Orthologues Bta-Mir-505-v1  Cfa-Mir-505-v1  Cja-Mir-505  Dno-Mir-505-v1  Eca-Mir-505-v1  Ete-Mir-505-v1  Hsa-Mir-505-v1  Laf-Mir-505-v1  Mml-Mir-505-v1  Mmr-Mir-505-v1  Mmu-Mir-505-v1  Ocu-Mir-505-v1  Pab-Mir-505-v1  Rno-Mir-505-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_79: 2306789-2306847 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-505-v1)		 Mir-505-v1 scaffold_79: 2306789-2306847 [+] UCSC
Mir-505-v2 scaffold_79: 2306789-2306847 [+] UCSC
Variant

Cpo-Mir-505-v1
Seed GUCAACA
Precursor
(pre-Mir +30nt flank)		 
CCUGCGGUGGUAAAUUGAUGCACUCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC
Get precursor sequence
Structure
        10           20        30        40        50         
CCUGCGGUGGUAAAUUG---|   A U   U           G    A        UCUGC 
                    AUGC C CAG GGGGGAGCCAG AAGU UUGAUGUU     \
                    UACG G GUC CUCCUUUGGUC UUCA AACUGCGA     C
CUUUUAGGUGCUUGAACCAC^   A -   U           G    C        UUUGA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-505-v1_5p* (predicted)
mirBase accessionMIMAT0047311
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGUU -23
Get sequence
Mature sequence

Cpo-Mir-505-v1_3p
mirBase accessionMIMAT0047312
Sequence 
36- CGUCAACACUUGCUGGUUUCCUC -59
Get sequence
Variant

Cpo-Mir-505-v2
Seed UCAACAC
Precursor
(pre-Mir +30nt flank)		 
CCUGCGGUGGUAAAUUGAUGCACUCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC
Get precursor sequence
Structure
        10           20        30        40        50         
CCUGCGGUGGUAAAUUG---|   A U   U           G    A       UUCUGC 
                    AUGC C CAG GGGGGAGCCAG AAGU UUGAUGU      \
                    UACG G GUC CUCCUUUGGUC UUCA AACUGCG      C
CUUUUAGGUGCUUGAACCAC^   A -   U           G    C       AUUUGA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-505-v2_5p* (predicted)
mirBase accessionMIMAT0047311
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGU -22
Get sequence
Mature sequence

Cpo-Mir-505-v2_3p
mirBase accessionMIMAT0047312
Sequence 
37- GUCAACACUUGCUGGUUUCCUC -59
Get sequence