| MirGeneDB ID | Eca-Mir-1343 |
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| Family name |
MIR-1343 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-1343
Cfa-Mir-1343
Cja-Mir-1343
Cpo-Mir-1343
Dno-Mir-1343
Hsa-Mir-1343
Laf-Mir-1343
Ocu-Mir-1343
Pab-Mir-1343
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009159.1: 1681153-1681211 [+]
UCSC
Ensembl
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| Seed |
UCCUGGG |
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Precursor
(pre-Mir +30nt flank) |
GGAACAGGAUGAUGAUGCUGGCUUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCCGGCCCCUCCUGGGGCCCGCACUCUCGCUCCGGGCCCGCUCCACCUUGCCUGCUGACA
Get precursor sequence
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| Structure | 10 20 30 40 50
GGAACAGGAUGAUGAUGCU---| U U U A C C CCUCUG
GGCU CGG GC GGGG GCGG CCCCGGG GGG \
CCGG GCC CG UCUC CGCC GGGGUCC CCC C
ACAGUCGUCCGUUCCACCUCGC^ - U C A C U CGGCCU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-1343_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UGGGGAGCGGCCCCCGGGCGGG -22
Get sequence
|
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| Mature sequence |
Eca-Mir-1343_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CUCCUGGGGCCCGCACUCUCGC -59
Get sequence
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