Mir-1343

MirGeneDB ID

Eca-Mir-1343

Family name

MIR-1343 (all species)

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-1343 Cfa-Mir-1343 Cja-Mir-1343 Cpo-Mir-1343 Dno-Mir-1343 Hsa-Mir-1343 Laf-Mir-1343 Ocu-Mir-1343 Pab-Mir-1343

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009159.1: 1681153-1681211 [+] UCSC Ensembl

Seed

UCCUGGG

Precursor
(pre-Mir +30nt flank)

GGAACAGGAUGAUGAUGCUGGCUUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCCGGCCCCUCCUGGGGCCCGCACUCUCGCUCCGGGCCCGCUCCACCUUGCCUGCUGACA

Get precursor sequence

Structure

        10           20        30        40        50         
GGAACAGGAUGAUGAUGCU---|   U   U  U    A    C       C   CCUCUG 
                      GGCU CGG GC GGGG GCGG CCCCGGG GGG      \
                      CCGG GCC CG UCUC CGCC GGGGUCC CCC      C
ACAGUCGUCCGUUCCACCUCGC^   -   U  C    A    C       U   CGGCCU 
       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-1343_5p* (predicted)

mirBase accession

None

Sequence

0- UGGGGAGCGGCCCCCGGGCGGG -22

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Mature sequence

Eca-Mir-1343_3p

mirBase accession

None

Sequence

37- CUCCUGGGGCCCGCACUCUCGC -59

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