| MirGeneDB ID | Bta-Mir-1343 |
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| Family name |
MIR-1343 (all species) |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-1343
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| Paralogues |
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| Orthologues |
Cfa-Mir-1343
Cja-Mir-1343
Cpo-Mir-1343
Dno-Mir-1343
Eca-Mir-1343
Hsa-Mir-1343
Laf-Mir-1343
Ocu-Mir-1343
Pab-Mir-1343
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037342.1: 65460282-65460340 [+]
UCSC
Ensembl
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| Seed |
UCCUGGG |
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Precursor
(pre-Mir +30nt flank) |
UCAGCAUGAUGACGAUGCUGGCUUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCUGGCCCCUCCUGGGGCCCGCACUCUCGCUCCGGGCCCGCUCCACCUCGGCUGCUGACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCAGCAUGAUGACGAUGCU---| U U U A C C CCUCUG
GGCU CGG GC GGGG GCGG CCCCGGG GGG \
CCGG GCC CG UCUC CGCC GGGGUCC CCC C
CCAGUCGUCGGCUCCACCUCGC^ - U C A C U CGGUCU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-1343_5p* |
| mirBase accession | MIMAT0011839 |
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| Sequence |
0- UGGGGAGCGGCCCCCGGGCGGG -22
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-1343-5p
|
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| Mature sequence |
Bta-Mir-1343_3p |
| mirBase accession | MIMAT0011840 |
|---|
| Sequence |
37- CUCCUGGGGCCCGCACUCUCGC -59
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-1343-3p
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