| MirGeneDB ID | Eba-Mir-87-o29 |
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| Family name |
MIR-87 (all species) |
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| Species |
Epimenia (Solenogaster) (Epimenia babai) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Agr-Mir-87-o29
Gsp-Mir-87
Mom-Mir-87-o29
Sne-Mir-87
War-Mir-87-o29
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| Node of Origin (locus) |
Aculifera
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia) |
WURV02181321.1: 1231-1289 [-]
Ensembl
|
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| Seed |
UGAGCAA |
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Precursor
(pre-Mir +30nt flank) |
CUUAGUCGAGUCAAUAAAUCUGUGUCUGGCGUGCCUGAAUCUUUGUCUCAAGCCUGUGAUUAUAAAGGUGAGCAAAGUUUCAGGUGUGUUAGAUGCACGUGCCGUCAUCACCGCGGAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUUAGUCGAGUCAAUAA--| C UG U U AA GUGA
AU UGUGUCUGGCG CCUGAA CUUUG CUC GCCU U
UG ACGUAGAUUGU GGACUU GAAAC GAG UGGA U
UAAGGCGCCACUACUGCCG^ C GU U - -- AAUA
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is unclear if this is Mir-87-P1 or P2 given that one of the paralogues was lost in this group and there are no sequence signatures to recognize one paralogue from the other. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
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| Star sequence |
Eba-Mir-87-o29_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GUGCCUGAAUCUUUGUCUCAAGCCU -25
Get sequence
|
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| Mature sequence |
Eba-Mir-87-o29_3p |
| mirBase accession | None |
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| Sequence |
37- GUGAGCAAAGUUUCAGGUGUGU -59
Get sequence
|
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