| MirGeneDB ID | Agr-Mir-87-o29 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Eba-Mir-87-o29
Gsp-Mir-87
Mom-Mir-87-o29
Sne-Mir-87
War-Mir-87-o29
|
|---|
| Node of Origin (locus) |
Aculifera
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granulata) |
JABBOT010000014.1: 11932562-11932622 [+]
Ensembl
|
|---|
| Seed |
UGAGCAA |
|---|
Precursor
(pre-Mir +30nt flank) |
GGUCGUCGUGUUGAGUAUUGGCUGCCUGCUGCGCCUGAAAUUUUGGCUCAAACCUGUUUUGCAGUAAAGGUGAGCAAAGUUUCAGGUGUAUCAGUUUGUCAGGUAACCAGCAUGUUUAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGUCGUCGUGUUGAGUA--| UGC C G AA GUUUU
UUGGC CUG UGCGCCUGAAAUUUUG CUC ACCU G
GACUG GAC AUGUGGACUUUGAAAC GAG UGGA C
AGAAUUUGUACGACCAAUG^ UUU U - -- AAUGA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is unclear if this is Mir-87-P1 or P2 given that one of the paralogues was lost in this group and there are no sequence signatures to recognize one paralogue from the other. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Agr-Mir-87-o29_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GCGCCUGAAAUUUUGGCUCAAACCU -25
Get sequence
|
|---|
| Mature sequence |
Agr-Mir-87-o29_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUGAGCAAAGUUUCAGGUGUAU -61
Get sequence
|
|---|
