MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-727-P1-v2

Family name MIR-727 (all species)
Seed UUGAGGC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-727
Paralogues Dre-Mir-727-P1-v1 
Orthologues Gmo-Mir-727-P1  Spt-Mir-727  Tni-Mir-727-P1-v1  Tni-Mir-727-P1-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Osteichthyes
Genome context
(danRer11)		 chr24: 26185425-26185487 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-727-P1-v2)		 Mir-727-P1-v1 chr24: 26185423-26185489 [+] UCSC Ensembl
Mir-727-P1-v2 chr24: 26185425-26185487 [+] UCSC Ensembl
Mir-728-P1 chr24: 26190564-26190624 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUUUUCCAGUCACCUGUAUGUCAUUUUCAGUCUUCAAUUCCUCCCAGCCCGUACCCAUCGAAACUGUGAGUUGAGGCGAGUUGAAGACUUAAAGUGCUGUACAGAUUCAAGUAUCUGCUCG
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Structure
        10          20        30        40         50        60 
GGUUUUUCCAGUCACCU--|    U      C            CU  -    CCGUACCCAU 
                   GUAUG CAUUUU AGUCUUCAAUUC  CC CAGC          \
                   CAUGU GUGAAA UCAGAAGUUGAG  GG GUUG          C
GCUCGUCUAUGAACUUAGA^    C      U            C-  A    AGUGUCAAAG 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-727-P1-v2_5p*
mirBase accessionMIMAT0003755
Sequence 
0- AGUCUUCAAUUCCUCCCAGCCC -22
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Mature sequence

Dre-Mir-727-P1-v2_3p
mirBase accessionMIMAT0003756
Sequence 
41- GUUGAGGCGAGUUGAAGACUUA -63
Get sequence
Proposed targets TargetScanFish: dre-miR-727