MirGeneDB ID | Dre-Mir-7147 |
Family name |
MIR-7147 (all species) |
Seed |
GUACCAU |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-7147
|
Paralogues |
|
Orthologues |
Cpi-Mir-7147
Lch-Mir-7147
Loc-Mir-7147
Mal-Mir-7147
Tni-Mir-7147
Xla-Mir-7147-P1
Xla-Mir-7147-P2
Xtr-Mir-7147
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (danRer11) |
chr24: 10948075-10948132 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGGAGAGUGUGAGAGGGAGUGCCCAGUGCUGUACCAUGCUGGUAGCCAGUAUGAAAUAGGGCUUGCUGGUAACCAGCGUUGUGCCCCACUGGUUGCUCAGAAAAAAAGUUGACUUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGGAGAGUGUGAGAGG--| GC CU C A UGAAA
GAGU CCAGUG GUAC AUGCUGGU GCCAGUA U
CUCG GGUCAC CGUG UGCGACCA UGGUCGU A
AUUUCAGUUGAAAAAAAGA^ UU CC U A UCGGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Dre-Mir-7147_5p |
mirBase accession | MIMAT0028205 |
Sequence |
0- UGUACCAUGCUGGUAGCCAGUA -22
Get sequence
|
Star sequence |
Dre-Mir-7147_3p* |
mirBase accession | None |
Sequence |
36- CUGGUAACCAGCGUUGUGCCCC -58
Get sequence
|