MirGeneDB ID | Lch-Mir-7147 |
---|---|
Family name | MIR-7147 (all species) |
Seed | GUACCAU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | |
Orthologues | Cpi-Mir-7147 Dre-Mir-7147 Loc-Mir-7147 Mal-Mir-7147 Tni-Mir-7147 Xla-Mir-7147-P1 Xla-Mir-7147-P2 Xtr-Mir-7147 |
Node of Origin (locus) | Osteichthyes |
Node of Origin (family) | Osteichthyes |
Genome context (LatCha1_add) |
JH129753.1: 40116-40175 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | AUGCUCUCCAACCAUCGGAGCUGCCAGUGAUGUACCAUGCUGGUAGCCAGUGUUAAAACAAGGCCUUGCUGGCAAUCAGUGUUGUGCCACACUGGCUUCUCAGUCUGAAAGUCAGCCGGUGet precursor sequence |
Structure | 10 20 30 40 50 AUGCUCUCCAACCAUCG--| CU AU C A UUAAAA GAG GCCAGUG GUAC AUGCUGGU GCCAGUG C CUC CGGUCAC CGUG UGUGACUA CGGUCGU A UGGCCGACUGAAAGUCUGA^ UU AC U A UCCGGA . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Lch-Mir-7147_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGUACCAUGCUGGUAGCCAGUG -22
Get sequence
|
Star sequence | Lch-Mir-7147_3p* (predicted) |
mirBase accession | None |
Sequence |
38- CUGGCAAUCAGUGUUGUGCCAC -60
Get sequence
|