MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-7147

Family name MIR-7147 (all species)
Seed GUACCAU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Cpi-Mir-7147  Dre-Mir-7147  Loc-Mir-7147  Mal-Mir-7147  Tni-Mir-7147  Xla-Mir-7147-P1  Xla-Mir-7147-P2  Xtr-Mir-7147 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(LatCha1_add)
JH129753.1: 40116-40175 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGCUCUCCAACCAUCGGAGCUGCCAGUGAUGUACCAUGCUGGUAGCCAGUGUUAAAACAAGGCCUUGCUGGCAAUCAGUGUUGUGCCACACUGGCUUCUCAGUCUGAAAGUCAGCCGGU
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Structure
        10          20        30        40        50         
AUGCUCUCCAACCAUCG--|  CU       AU    C        A       UUAAAA 
                   GAG  GCCAGUG  GUAC AUGCUGGU GCCAGUG      C
                   CUC  CGGUCAC  CGUG UGUGACUA CGGUCGU      A
UGGCCGACUGAAAGUCUGA^  UU       AC    U        A       UCCGGA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Lch-Mir-7147_5p (predicted)

mirBase accessionNone
Sequence
0- UGUACCAUGCUGGUAGCCAGUG -22
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Star sequence

Lch-Mir-7147_3p* (predicted)

mirBase accessionNone
Sequence
38- CUGGCAAUCAGUGUUGUGCCAC -60
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