| MirGeneDB ID | Dgr-Mir-92-o139 |
|---|---|
| Family name | MIR-92 (all species) |
| Species | Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) |
| MiRBase ID | |
| Paralogues | Dgr-Mir-92-o140 |
| Orthologues | Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92 |
| Node of Origin (locus) | D. gyrociliatus |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_904063045.1_Dgyrociliatus) |
CAJFCJ010000015.1: 712624-712682 [+] |
| Clustered miRNAs (< 50kb from Mir-92-o139) |
Mir-92-o139
CAJFCJ010000015.1: 712624-712682 [+]
Mir-92-o140 CAJFCJ010000015.1: 712837-712943 [+] |
| Seed | AUUGCAC |
| Precursor (pre-Mir +30nt flank) |
AAUGAAUAAUAAUUUGACGCCCUCGCGGAGGGGCCUGGCUCGUGCAAAUUGGUGUAAAAUAGUUACAAAUUGCACCUGCCCCGGCCUGCCUUUGCGGCUUGUCAAAAAUCAACAAAGUGGet precursor sequence |
| Structure | 10 20 30 40 50 AAUGAAUAAUAAUUUGAC---| CUC -- U- UC A GUGUAA GCC GCGGAGG GGCC GGC GUGCAA UUG A CGG CGUUUCC CCGG CCG CACGUU AAC A GUGAAACAACUAAAAACUGUU^ --- GU CC UC A AUUGAU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Dgr-Mir-92-o139_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGCCUGGCUCGUGCAAAUUG -21
Get sequence
|
| Mature sequence | Dgr-Mir-92-o139_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AAUUGCACCUGCCCCGGCCUGC -59
Get sequence
|
