| MirGeneDB ID | Cte-Mir-2-o19 |
|---|
| Family name |
MIR-2 (all species) |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-2e-1
|
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| Paralogues |
Cte-Mir-2-o13
Cte-Mir-2-o14
Cte-Mir-2-o15
Cte-Mir-2-o16
Cte-Mir-2-o17
Cte-Mir-2-o18
Cte-Mir-2-P12
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
C. teleta
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_36111: 940-1000 [+]
Ensembl
|
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| Seed |
AUCACAG |
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Precursor
(pre-Mir +30nt flank) |
UUGAAUUGCUUGCUUUUGCGAAUAUUCUGCGCUCUGAGUGGCUGUGAUAUGUUCAGUUGAGUCAGCAUAUCACAGUCAAUGCUUUGGGCUCAGAAUAUUCUGCUCUCUUUCUGCUCUUCCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGAAUUGCUUGCUUUU- - C U ---| UUCAGU
GC GAAUAUUCUG GCUC GAGU GGCUGUGAUAUG U
CG CUUAUAAGAC CGGG UUCG CUGACACUAUAC G
UCCUUCUCGUCUUUCUCU U U U UAA^ GACUGA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Cte-Mir-2-o19_5p* |
| mirBase accession | None |
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| Sequence |
0- GCUCUGAGUGGCUGUGAUAUG -21
Get sequence
|
|---|
| Mature sequence |
Cte-Mir-2-o19_3p |
| mirBase accession | MIMAT0013527 |
|---|
| Sequence |
37- UAUCACAGUCAAUGCUUUGGGCUC -61
Get sequence
|
|---|
