MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-203-P5-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-203-P5-v2  Cmi-Mir-203-P6-v1  Cmi-Mir-203-P6-v2 
Orthologues Lch-Mir-203  Spt-Mir-203 
Node of Origin (locus) C. milii
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635863.1: 10847409-10847468 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGAAAGAAAAUAAAAGUCUCCCUGGUGCAGUGGUUCUAAUCAGUUCAACAGUUCUCUAUCGAAAUUGUGAAAUGUUUAGGACCACUUGACCUGGGCGGCCAAUAAACUUCGAAGGAAA
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Structure
        10          20        30        40        50          
ACAGAAAGAAAAUAAAA--|  U   U   GC           U  G    A   UUCUCU 
                   GUC CCC GGU  AGUGGUUCUAA CA UUCA CAG      \
                   CGG GGG CCA  UCACCAGGAUU GU AAGU GUU      A
AAAGGAAGCUUCAAAUAAC^  C   U   GU           U  A    -   AAAGCU 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Star sequence

Cmi-Mir-203-P5-v1_5p*

mirBase accessionNone
Sequence
0- AGUGGUUCUAAUCAGUUCAACAG -23
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Mature sequence

Cmi-Mir-203-P5-v1_3p

mirBase accessionNone
Sequence
38- GUGAAAUGUUUAGGACCACUUG -60
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