MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-185

Family name MIR-185 (all species)
Seed GGAGAGA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-185
Paralogues
Orthologues Bta-Mir-185  Cpo-Mir-185  Dno-Mir-185  Ete-Mir-185  Hsa-Mir-185  Mml-Mir-185  Mmu-Mir-185  Ocu-Mir-185  Rno-Mir-185 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chr26: 29296014-29296069 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-185)
Mir-1306 chr26: 29255668-29255728 [-] UCSC Ensembl
Mir-185 chr26: 29296014-29296069 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGCCUGGCUUGAGUGGGGGGUGAGGGAUUGGAGAGAAAGGCAGUUCCUGAUGGUCCCCUCCCCAGGGGCUGGCUUUCCUCUGGUCCUUCCCUCCCAAUGACCACGUCUUCAUCG
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Structure
        10          20        30        40        50        
CGGGCCUGGCUUGAGUG--|    U       UG   A     G         AUGGUC 
                   GGGGG GAGGGAU  GAG GAAAG CAGUUCCUG      \
                   CCCUC CUUCCUG  CUC CUUUC GUCGGGGAC      C
GCUACUUCUGCACCAGUAA^    C       GU   -     G         CCCUCC 
    110       100        90        80         70        60
Deep sequencing
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CommentIn dog the highest read count for the Dicer cut for the 3p arm is shifted +1 but the corresponding 5p arm reads are only about ~50% of the read annotated here.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-185_5p

mirBase accessionMIMAT0006660
Sequence
0- UGGAGAGAAAGGCAGUUCCUGA -22
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Proposed targets TargetScanVert: cfa-miR-185
miRDB: MIMAT0006660
Star sequence

Cfa-Mir-185_3p*

mirBase accessionNone
Sequence
35- AGGGGCUGGCUUUCCUCUGGU -56
Get sequence