MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-279-o10

Family name MIR-279 (all species)
Seed GACUAGA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-247
Paralogues Cel-Mir-279-o7  Cel-Mir-279-o8  Cel-Mir-279-o9 
Orthologues Bpl-Mir-279  Cbr-Mir-279-o10  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lpo-Mir-279-P10  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(ce11)		 chrX: 4756991-4757052 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-279-o10)		 Mir-279-o10 chrX: 4756991-4757052 [+] UCSC Ensembl
Mir-2-o5 chrX: 4757123-4757186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUCUACAAAUUACCAGCUAUUUUCCAAGUAGAGAAAAGUUUCUAAUUACCCAUCAUGCACAAAUGUGGUGACUAGAGCCUAUUCUCUUCUUGGAAAAGUGGCGACUCUUGUCAAAAGUAU
Get precursor sequence
Structure
        10         20         30        40        50        60
UUGUCUACAAAUUACCA-    -|        U      A  U     A     CAUCAUG 
                  GCUA UUUUCCAAG AGAGAA AG UUCUA UUACC       C
                  CGGU AAAAGGUUC UCUCUU UC GAGAU AGUGG       A
UAUGAAAACUGUUCUCAG    G^        U      A  C     C     UGUAAAC 
120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-279-o10_5p*
mirBase accessionMIMAT0015119
Sequence 
0- UAGAGAAAAGUUUCUAAUUACC -22
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Proposed targets microrna.org: MIMAT0015119
Mature sequence

Cel-Mir-279-o10_3p
mirBase accessionMIMAT0000303
Sequence 
40- UGACUAGAGCCUAUUCUCUUCU -62
Get sequence
Proposed targets microrna.org: MIMAT0000303
TargetScanWorm: cel-miR-247