MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-5350-P2

Family name MIR-5350 (all species)
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-5350b
Paralogues Asu-Mir-5350-P1  Asu-Mir-5350-P3  Asu-Mir-5350-P4  Asu-Mir-5350-P5  Asu-Mir-5350-P6 
Orthologues
Node of Origin (locus) A.suum
Node of Origin (family) A.suum
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold1190: 38567-38623 [-]
Clustered miRNAs
(< 50kb from Mir-5350-P2)		 Mir-5350-P3 Scaffold1190: 38272-38328 [-]
Mir-5350-P2 Scaffold1190: 38567-38623 [-]
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
UACCUGACGCAAGGAAGAUGCAGGAGGUGGCGUUUCUAAGGUCUGCCAAAUUGUCUGAUCGCAAAUUUGGCACACCUAAGGAGCACUCGUUCCCGCUGGCUACGUCCACCUUCUAUC
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Structure
        10          20        30        40        50        
UACCUGACGCAAGGAAGAU--| A    GU  C      A    C         GUCUG 
                     GC GGAG  GG GUUUCU AGGU UGCCAAAUU     \
                     CG CCUU  UC CGAGGA UCCA ACGGUUUAA     A
CUAUCUUCCACCUGCAUCGGU^ C    GC  A      A    C         ACGCU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-5350-P2_5p*
mirBase accessionMIMAT0021554
Sequence 
0- CGUUUCUAAGGUCUGCCAAAUU -22
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Mature sequence

Asu-Mir-5350-P2_3p
mirBase accessionMIMAT0021555
Sequence 
35- UUUGGCACACCUAAGGAGCACU -57
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