Mir-5734

MirGeneDB ID

Tur-Mir-5734

Family name

MIR-5734 (all species)

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-5734

Paralogues

Orthologues

Node of Origin (locus)

T. urticae

Node of Origin (family)

T. urticae

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587301.1: 1423018-1423077 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-5734)

Mir-5733 HE587301.1: 1416967-1417036 [-] Ensembl
Mir-5731-P1c HE587301.1: 1420763-1420850 [-] Ensembl
Mir-5734 HE587301.1: 1423018-1423077 [-] Ensembl
Mir-5736-v2 HE587301.1: 1424673-1424737 [-] Ensembl
Mir-5736-v1 HE587301.1: 1424674-1424736 [-] Ensembl

Seed

UGGGGUA

Precursor
(pre-Mir +30nt flank)

AAGGAUUUGGAAUUGAAGAUGCUUCAGAUUGCAUUGACUUCUAUCCGAAUGUAUCCCCUAUGAAAAUCAUUGGGGUAGAAGUCAGUAUAAUCUAAAGUUAUCAAUUAAUGCGUAUCAAUC

Get precursor sequence

Structure

        10         20         30        40        50         
AAGGAUUUGGAAUUGAA-   -|   C      C              G    UAUCCCC 
                  GAU GCUU AGAUUG AUUGACUUCUAUCC AAUG       U
                  CUA UGAA UCUAAU UGACUGAAGAUGGG UUAC       A
CUAACUAUGCGUAAUUAA   U^   A      A              G    UAAAAGU 
.       110       100        90        80        70        60