| MirGeneDB ID | Tni-Mir-723-P1 |
|---|
| Family name |
MIR-723 (all species) |
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| Species |
Pufferfish (Tetraodon nigroviridis) |
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| MiRBase ID |
|
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| Paralogues |
Tni-Mir-723-P2
|
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| Orthologues |
Gmo-Mir-723-P1
Mal-Mir-723-P1a
Mal-Mir-723-P1b
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Clupeocephala
|
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Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
3: 14958877-14958937 [-]
UCSC
Ensembl
|
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| Seed |
GACAUCA |
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Precursor
(pre-Mir +30nt flank) |
CGGGAGGCGUGCGCUCCACGGCGAGGAUAACGGCAGCUUUGUGUGAUGUUCCUUCUGACAUACGGAGAAGACAUCAGAUAAAUCUGCGCUUAUCCUCGUUAGUAAAUCACAGACUCCCGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGGGAGGCGUGCGCUCCAC--| CG C G UC UGACA
GGCGAGGAUAA GCAG UUUGU UGAUGU CUUC \
UUGCUCCUAUU CGUC AAAUA ACUACA GAAG U
AGGCCCUCAGACACUAAAUGA^ CG U G -- AGGCA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Tni-Mir-723-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGCAGCUUUGUGUGAUGUUCCUUC -25
Get sequence
|
|---|
| Mature sequence |
Tni-Mir-723-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- AGACAUCAGAUAAAUCUGCGCUU -61
Get sequence
|
|---|
