MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-935

Family name MIR-935 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-935
Paralogues Rno-Mir-935-v1 
Orthologues Cja-Mir-935  Mmr-Mir-935  Pab-Mir-935 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr1: 64330562-64330621 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-935-v2)		 Mir-935-v1 chr1: 64330562-64330621 [-] UCSC Ensembl
Mir-935-v2 chr1: 64330562-64330621 [-] UCSC Ensembl
Variant

Rno-Mir-935-v2
Seed CAGUUAC
Precursor
(pre-Mir +30nt flank)		 
CUACUCAAGGCCGGCGGCGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCCAGCUCCCGAGGCUCC
Get precursor sequence
Structure
        10           20        30        40        50         
CUACUCAAGGCCGGCGGC---| C    G    A             CCC  C   CAUCC 
                     GG GCGG CGGC GUGGCGGGAGCGG   CU GGC     U
                     CC CGCC GCCG CAUCGCCUUCGCC   GA CCG     C
CCUCGGAGCCCUCGACCUCGC^ U    -    C             AUU  C   UCUGC 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Rno-Mir-935-v2_5p*
mirBase accessionNone
Sequence 
0- AGUGGCGGGAGCGGCCCCUCGGC -23
Get sequence
Mature sequence

Rno-Mir-935-v2_3p
mirBase accessionMIMAT0012845
Sequence 
37- CCAGUUACCGCUUCCGCUACCGC -60
Get sequence
Proposed targets microrna.org: MIMAT0012845
TargetScanVert: rno-miR-935
miRDB: MIMAT0012845
Variant

Rno-Mir-935-v1
Seed AGUUACC
Precursor
(pre-Mir +30nt flank)		 
CUACUCAAGGCCGGCGGCGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCCAGCUCCCGAGGCUCC
Get precursor sequence
Structure
        10           20        30        40        50         
CUACUCAAGGCCGGCGGC---| C    G    A             CCC  C  CCAUCC 
                     GG GCGG CGGC GUGGCGGGAGCGG   CU GG      U
                     CC CGCC GCCG CAUCGCCUUCGCC   GA CC      C
CCUCGGAGCCCUCGACCUCGC^ U    -    C             AUU  C  GUCUGC 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-935-v1_5p*
mirBase accessionNone
Sequence 
0- AGUGGCGGGAGCGGCCCCUCGG -22
Get sequence
Mature sequence

Rno-Mir-935-v1_3p
mirBase accessionMIMAT0012845
Sequence 
38- CAGUUACCGCUUCCGCUACCGC -60
Get sequence
Proposed targets microrna.org: MIMAT0012845
TargetScanVert: rno-miR-935
miRDB: MIMAT0012845