MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-1962-P1

Family name MIR-1962 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID
Paralogues Rno-Mir-1962-P2 
Orthologues Mmu-Mir-1962 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Muridae
Genome context
(rn6)		 chr1: 207802815-207802877 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1962-P1)		 Mir-1962-P1 chr1: 207802815-207802877 [+] UCSC Ensembl
Mir-1962-P2 chr1: 207848066-207848128 [+] UCSC Ensembl
Seed GAGGCUG
Precursor
(pre-Mir +30nt flank)		 
GUGGCAUUUGCAAACUCUCUAGUCAGUCAGAAGUCCCAUCUGUCUGCCUCUUUCUCCUUCAGUUUCCAUGGAGAGGCUGGCACUGGGACACACCAUGACUGAUGGUGCACUCCCCCACUACCG
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Structure
        10        20        30           40        50        60 
GUGGCAUUUGCAAACUCUCUA        GAA---|     UC    U        CUCCUUC 
                     GUCAGUCA      GUCCCA  UGUC GCCUCUUU       A
                     UAGUCAGU      CAGGGU  ACGG CGGAGAGG       G
GCCAUCACCCCCUCACGUGG-        ACCACA^     C-    U        UACCUUU 
 120       110        100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Rno-Mir-1962-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AAGUCCCAUCUGUCUGCCUCUUU -23
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Mature sequence

Rno-Mir-1962-P1_3p (predicted)
mirBase accessionNone
Sequence 
41- AGAGGCUGGCACUGGGACACAC -63
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