Mir-190-P3

MirGeneDB ID

Rno-Mir-190-P3

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-190b

Paralogues

Rno-Mir-190-P1c Rno-Mir-190-P1d

Orthologues

Aae-Mir-190 Aca-Mir-190-P3 Ami-Mir-190-P3 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bla-Mir-190 Bpl-Mir-190 Bta-Mir-190-P3 Cbr-Mir-190 Cel-Mir-190 Cfa-Mir-190-P3 Cgi-Mir-190 Cmi-Mir-190-P3 Cpi-Mir-190-P3 Cpo-Mir-190-P3 Cte-Mir-190 Dan-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dno-Mir-190-P3 Dpu-Mir-190 Dre-Mir-190-P3 Dsi-Mir-190 Dya-Mir-190 Esc-Mir-190 Ete-Mir-190-P3 Gga-Mir-190-P3 Gja-Mir-190-P3 Gmo-Mir-190-P3 Hme-Mir-190 Hsa-Mir-190-P3 Isc-Mir-190 Lch-Mir-190-P3 Mal-Mir-190-P3 Mdo-Mir-190-P3 Mml-Mir-190-P3 Mmu-Mir-190-P3 Npo-Mir-190 Oan-Mir-190-P3 Obi-Mir-190 Ocu-Mir-190-P3 Ovu-Mir-190 Pbv-Mir-190-P3 Pfl-Mir-190 Pma-Mir-190-o3 Pmi-Mir-190 Sha-Mir-190-P3 Sko-Mir-190 Spt-Mir-190-P3 Sto-Mir-190-P3 Tca-Mir-190 Tgu-Mir-190-P3 Tni-Mir-190-P3 Xbo-Mir-190 Xla-Mir-190-P3a Xla-Mir-190-P3b Xtr-Mir-190-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr2: 189421147-189421206 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACACCAAAGUUUACCUGCCUGCUUCUGUGUGAUAUGUUUGAUAUUAGGUUGUUAAAUUAUGAACCAACUAAAUGUCAAACAUUCUCACAGCAGUGAGGAGACUUGGCACCACCUCCUCU

Get precursor sequence

Structure

        10           20         30        40        50         
UACACCAAAGUUUACCUG---   -|  U     U  U            A     UUAAAU 
                     CCU GCU CUGUG GA AUGUUUGAUAUU GGUUG      \
                     GGA UGA GACAC CU UACAAACUGUAA UCAAC      U
UCUCCUCCACCACGGUUCAGA   G^  C     U  -            A     CAAGUA 
.       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-190-P3_5p

mirBase accession

MIMAT0005302

Sequence

0- UGAUAUGUUUGAUAUUAGGUUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0005302
TargetScanVert: rno-miR-190b-5p
miRDB: MIMAT0005302

Star sequence

Rno-Mir-190-P3_3p*

mirBase accession

MIMAT0017298

Sequence

37- ACUAAAUGUCAAACAUUCUCACA -60

Get sequence

Proposed targets

TargetScanVert: rno-miR-190b-3p
miRDB: MIMAT0017298