Mir-190-P3

MirGeneDB ID

Dre-Mir-190-P3

Family name

MIR-190 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-190b

Paralogues

Dre-Mir-190-P1b

Orthologues

Aae-Mir-190 Aca-Mir-190-P3 Aga-Mir-190 Agr-Mir-190 Ami-Mir-190-P3 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Bta-Mir-190-P3 Cbr-Mir-190 Cel-Mir-190 Cfa-Mir-190-P3 Cja-Mir-190-P3 Cmi-Mir-190-P3 Cpi-Mir-190-P3 Cpo-Mir-190-P3 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dno-Mir-190-P3 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Eca-Mir-190-P3 Egr-Mir-190 Esc-Mir-190 Ete-Mir-190-P3 Gga-Mir-190-P3 Gja-Mir-190-P3 Gmo-Mir-190-P3 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Hsa-Mir-190-P3 Isc-Mir-190 Laf-Mir-190-P3 Lch-Mir-190-P3 Mal-Mir-190-P3 Mdo-Mir-190-P3 Mgi-Mir-190 Mml-Mir-190-P3 Mmr-Mir-190-P3 Mmu-Mir-190-P3 Mom-Mir-190 Neu-Mir-190-P3 Npo-Mir-190 Oan-Mir-190-P3 Obi-Mir-190 Ocu-Mir-190-P3 Ofu-Mir-190 Ovu-Mir-190 Pab-Mir-190-P3 Pau-Mir-190 Pbv-Mir-190-P3 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pma-Mir-190-o3 Pmi-Mir-190 Pve-Mir-190 Rno-Mir-190-P3 Rph-Mir-190 Sha-Mir-190-P3 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Spt-Mir-190-P3 Sto-Mir-190-P3 Tca-Mir-190 Tgu-Mir-190-P3 Tni-Mir-190-P3 Tur-Mir-190 War-Mir-190 Xbo-Mir-190 Xla-Mir-190-P3a Xla-Mir-190-P3b Xtr-Mir-190-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr16: 17705910-17705973 [-] UCSC Ensembl

Seed

GAUAUGU

Precursor
(pre-Mir +30nt flank)

GGUGGAGUUUCAGAUAUGUUACAGACUAUGUGAUAUGUUUGAUAUUCGGUUGCUUUCUUUAUAUCAUGUCAACUAAAUAUCAGACAUAUUCCUAUAGACUGUGACACAAAUCUUCACAUCUGUG

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Structure

        10          20        30         40        50        60 
GGUGGAGUUUCAGAUAU--       A     U-|              CG    CUUUCUUU 
                   GUUACAG CUAUG  GAUAUGUUUGAUAUU  GUUG        \
                   CAGUGUC GAUAU  UUAUACAGACUAUAA  CAAC        A
GUGUCUACACUUCUAAACA       A     CC^              AU    UGUACUAU 
  120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-190-P3_5p

mirBase accession

MIMAT0003747

Sequence

0- UGAUAUGUUUGAUAUUCGGUUG -22

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Proposed targets

TargetScanFish: dre-miR-190b

Star sequence

Dre-Mir-190-P3_3p*

mirBase accession

None

Sequence

41- ACUAAAUAUCAGACAUAUUCCUA -64

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